Add RandomForestClassifier as a SML
This patch adds a SML which uses RandomForestClassifier algorithm (supervised). Change-Id: I6d7f3edb1fbf386a0fd287a74ca6c12b55ad4aff
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#!/usr/bin/env python
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# Copyright (c) 2016 FUJITSU LIMITED
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#
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# Licensed under the Apache License, Version 2.0 (the "License"); you may
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# not use this file except in compliance with the License. You may obtain
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# a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS, WITHOUT
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# WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the
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# License for the specific language governing permissions and limitations
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# under the License.
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import logging
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import numpy as np
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from sklearn import ensemble
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from sklearn.metrics import classification_report
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import voluptuous
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from monasca_analytics.sml.base import BaseSML
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from monasca_analytics.util.validation_utils import NoSpaceCharacter
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logger = logging.getLogger(__name__)
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ANOMALY = 1
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NON_ANOMALY = 0
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N_SAMPLES = 1000
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class RandomForestClassifier(BaseSML):
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"""Anomaly detection based on the RandomForestClassifier algorithm"""
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def __init__(self, _id, _config):
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super(RandomForestClassifier, self).__init__(_id, _config)
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self._nb_samples = int(_config['nb_samples'])
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@staticmethod
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def validate_config(_config):
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randomforest_schema = voluptuous.Schema({
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'module': voluptuous.And(
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basestring, NoSpaceCharacter()),
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'nb_samples': voluptuous.Or(float, int)
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}, required=True)
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return randomforest_schema(_config)
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@staticmethod
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def get_default_config():
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return {
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'module': RandomForest.__name__,
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'nb_samples': N_SAMPLES
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}
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def get_params():
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return [
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params.ParamDescriptor('nb_samples', type_util.Number(), N_SAMPLES)
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]
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def number_of_samples_required(self):
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return self._nb_samples
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def _generate_train_test_sets(self, samples, ratio_train):
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num_samples_train = int(len(samples) * ratio_train)
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data, labels = np.hsplit(samples, [-1])
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X_train = np.array(data[:num_samples_train])
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_labels = np.array(labels[:num_samples_train])
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X_train_label = _labels.ravel()
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X_test = np.array(data[num_samples_train:])
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_labels = np.array(labels[num_samples_train:])
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X_test_label = _labels.ravel()
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return X_train, X_train_label, X_test, X_test_label
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def _get_best_detector(self, train, label):
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detector = ensemble.RandomForestClassifier()
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detector.fit(train, label)
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return detector
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def learn_structure(self, samples):
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X_train, X_train_label, X_test, X_test_label = \
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self._generate_train_test_sets(samples, 0.75)
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logger.info('Trainig with ' + str(len(X_train)) +
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'samples; testing with ' + str(len(X_test)) + ' samples.')
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rf_detector = self._get_best_detector(X_train, X_train_label)
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Y_test = rf_detector.predict(X_test)
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num_anomalies = Y_test[Y_test == ANOMALY].size
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logger.info('Found ' + str(num_anomalies) +
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' anomalies in testing set')
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logger.info('Confusion Matrix: \n{}'.
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format(classification_report(
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X_test_label,
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Y_test,
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target_names=['no', 'yes'])))
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return rf_detector
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@ -0,0 +1,58 @@
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#!/usr/bin/env python
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# Copyright (c) 2016 Hewlett Packard Enterprise Development Company, L.P.
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#
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# Licensed under the Apache License, Version 2.0 (the "License"); you may
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# not use this file except in compliance with the License. You may obtain
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# a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS, WITHOUT
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# WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the
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# License for the specific language governing permissions and limitations
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# under the License.
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import logging
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import numpy as np
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from sklearn import ensemble
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from monasca_analytics.sml import random_forest_classifier
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from test.util_for_testing import MonanasTestCase
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logger = logging.getLogger(__name__)
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class TestRandomForestClassifier(MonanasTestCase):
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def setUp(self):
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super(TestRandomForestClassifier, self).setUp()
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self.rf_sml = random_forest_classifier.RandomForestClassifier(
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"fakeid", {"module": "fake", "nb_samples": 1000})
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def tearDown(self):
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super(TestRandomForestClassifier, self).tearDown()
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def get_testing_data(self):
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a = np.random.uniform(size=1000)
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b = np.random.uniform(size=1000)
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c = np.random.uniform(size=1000)
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d = np.random.uniform(size=1000)
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labels = np.random.randint(2, size=1000)
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return np.array([a, b, c, d, labels]).T
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def test_generate_train_test_sets(self):
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data = self.get_testing_data()
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X_train, X_train_labeled, X_test, X_test_labeled =\
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self.rf_sml._generate_train_test_sets(data, 0.6)
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self.assertEqual(600, len(X_train))
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self.assertEqual(600, len(X_train_labeled))
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self.assertEqual(400, len(X_test))
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self.assertEqual(400, len(X_test_labeled))
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def test_learn_structure(self):
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data = self.get_testing_data()
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clf = self.rf_sml.learn_structure(data)
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self.assertIsInstance(clf, ensemble.RandomForestClassifier)
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@ -114,7 +114,8 @@ class CommonUtilTest(unittest.TestCase):
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"IsolationForest",
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"EllipticEnvelope",
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"DecisionTreeClassifier",
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"LogisticRegression"],
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"LogisticRegression",
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"RandomForestClassifier"],
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names)
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def test_get_voter_class_by_name(self):
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